CPTAC (2006-2011)

CPTAC (2011 -present)

• TCGA Ovarian Cancer CompRef Samples
• Proteogenomics of Colorectal Cancer, Zhang et al., (2014) Nature
• Time Course Colon Cancer (0,10,30,60)
• TCGA Colorectal Cancer Scientific Data, Slebos et al., (2015) Scientific Data
• Time Course Breast Cancer (0,60)
• Time Course Breast Cancer (0,5,30,60)
• TCGA Colorectal Cancer CompRef Samples
• TCGA Breast Cancer CompRef Samples
• Normal Colon Epithelium Samples
• Embedding Media Study (OCT)
• TCGA Ovarian Cancer
• Breast Cancer Proteogenomics Landscape Study, Mertins et al., (2016) Nature
• Proteogenomics of Ovarian Cancer, Zhang et al., (2016) Cell
• NCI‐7 Cell Line Panel, Clark et al., (2018) J Proteome Res.
• Reproducible Proteome and Phosphoproteome Workflow, Mertins et al., (2018) Nat. Protoc.
• Buparlisib treated xenograft tumors of TNBC, Mundt et al., (2018) Cancer Res.
• Therapeutic Targets in Breast Cancer, Huang et al., (2017) Nat. Commun.
• CPTAC Breast Cancer Confirmatory Study (early release)
• CPTAC CCRCC Discovery Study (early release)
• Colon Cancer Therapeutic Opportunities, Vasaikar et al., (2019) Cell
• System Suitability (CompRef) Study
• CPTAC LUAD Discovery Study (early release)
• CPTAC Colon Cancer Confirmatory Study (early release)
• Two Dimensional DIA
• Proteogenomic Insights Into HPV-negative Head and Neck Squamous Cell Carcinoma, Huang et al., (2021) Cancer Cell
• Proteogenomic Landscape of Breast Cancer Tumorigenesis, Krug et al., (2020) Cell
• Proteogenomics of ccRCC, Clark et al., (2019) Cell
• CPTAC GBM Discovery Study (early release: embargo March 1, 2021)
• Microscaled Proteogenomic Methods, Satpathy et al., (2020) Nat. Commun.
• CPTAC LSCC Discovery Study (early release: embargo Dec 1, 2021)
• Glycoproteomic Characterization of Ovarian Cancer, Hu et al., (2020) Cell Reports
• Endometrial Carcinoma Proteogenomics, Dou et al., (2020) Cell
• CPTAC UCEC Discovery Study (early release)
• CPTAC Ovarian Cancer Confirmatory Study (early release)
• Proteogenomics of LUAD, Gillette et al., (2020) Cell
• CPTAC PDAC Discovery Study (early release: embargo Feb 28, 2022)
• TCGA Colorectal Cancer
• Proteogenomics of LSCC, Satpathy et al., (2021) Cell
• Gilteritinib resistance in AML, Joshi et al., (2021) Cancer Cell
• Proteogenomic and Metabolomic Characterization of Human Glioblastoma Wang et al., (2021) Cancer Cell
• Time Course Ovarian Cancer (0,5,30,60)
• TCGA Breast Cancer

• Http Data Access